Stem-loop cme-MIR398b

Accession

MI0023253

Description

Cucumis melo cme-MIR398b precursor miRNA

Gene family

MIPF0000107; MIR398

Sequence

cccaaaggagugaacccgagaacacaagauugcauuugagauuugcccaauugauugauuuuuguuuguugggaggauuaauucaacauauugcucuuUGUGUUCUCAGGUCACCCCUUuggagacac
.(((((((.((((.((.(((((((((((...(((.(((((((((.((((((.(((........))).)))))).)))))...)))).....)))..))))))))))).)))))).)))))))......

Structure

-----c       a    a  c           auu   ----u    ---     g      u   uga 
      ccaaagg guga cc gagaacacaag   gca     uuga   gauuu cccaau gau   u
      ||||||| |||| || |||||||||||   |||     ||||   ||||| |||||| |||    
      gguUUCC CACU GG CUCUUGUGUuu   cgu     aacu   uuagg ggguug uug   u
cacaga       C    -  A           -cu   uauac    uaa     a      u   uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR398b

• Accession: MIMAT0026149
• Description: Cucumis melo cme-miR398b mature miRNA
• Sequence: 99 - UGUGUUCUCAGGUCACCCCUU - 119
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877