miRBase entry: cme-MIR854

Dead hairpin entry

Stem-loop cme-MIR854


Accession
MI0023204
Description
Cucumis melo cme-MIR854 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

87 reads, 296.0 reads per million, 26 experiments
aaucaguggaGAUGAGGAUAGUGAGGAGGAGgaagacacaggaaugggggaagucgauguugagaaugcagguccugggaucacugaguaaugauuguuguaggaauuuuguaggaacagagaaaaagguuuucacuuuaagagacugacacauacuugaguuauuacaguuggggaaauuaacaugucuguauugugcucucauucuuucucuugauaucaaaugauaaaagcuuaugugguucucuuuucgaguguauuuuugcuauuguccaaaucauuuuccuccuaaagugauuuuguaauggaaauaagucauuuuuuuaaaaaaggaaaucuaaaaucauucuaaaauuuuaaagaaucgcuugguaguugcaaaugcagugguuaaacucaaaguauuugcaaguauagcacaauguacaagagcuugcaaauauaucuuugaguguauuagugagacuauuuuguuaauaagaguauccaauaguuuuuuaugugaagacaccaaaauuggccaucaagaucauuucuuuccucuucagaggcucuucuucucaacaauguagcaucuucagaggacucuuuc
...(..((((((((...(((.((..(((.((((((((....(((.((((((((..(((.((((...(((((((((((.(((((........))))).)...))))..))))))...............((((((((..((((((((((....((((((..((((..((((((((.....))))).)))...(((((((((............(((..((((....)))).))).....((((((((.((((.(((((.(((((..((((((.(.((((((((((......)))))))))).))))))).........((((((((....))))))))..)))))))))).))))......))))))))...(((.((((((((((..(((......)))..)))))))))).)))))))))))).((((((((((((.(((((((......))))))).))))).))..)))))))))..))))))....)))))))))).)))))))).(((....)))...)))).)))....)))))))))))....).))))))))))..)).)))..))))))))..).........

Structure
------aau ag        AGG   G  AG   G       - acag   u        --uc   g    gaaugcagguccugggaucacugaguaaugauuguuguaggaauuuuguaggaacagagaaaaag        uu          acac      ga    -----------------------uuacaguuggggaaauuaacaugucug         ---------cucauucuuucucuugauaucaaaugauaaaagcuuau        -----c    c     u     -----------------------------ug      u c          cc 
         c  uggaGAUG   AUA UG  GAG AGgaaga c    gaa gggggaag    gau uuga                                                                 guuuucac  uaagagacug    auacuu  guua                                                  uauugugcu                                               gugguucu      uuuu gagug auuuu                               cuauug c aaaucauuuu  u
         |  ||||||||   ||| ||  ||| ||||||| |    ||| ||||||||    ||| ||||                                                                 ||||||||  ||||||||||    ||||||  ||||                                                  |||||||||                                               ||||||||      |||| ||||| |||||                               |||||| | ||||||||||   
         g  acuucuac   ugu ac  cuc uucuucu g    cuu cuccuuuc    cua aacu                                                                 cagaagug  auuuuuugau    uaugag  uaau                                                  guaacacga                                               cgcuaaga      aaaa cuuac uaaaa                               gguaau g uuuagugaaa  c
cuuucucag ag        -ga   a  aa   -       c gaga   -        uuua   g    ---------------------------------------------------accgguuaaaacca        -u          aacc      aa    uguuuuaucagagugauuaugugaguuucuauauaaacguucgagaacau         uaugaacguuuaugaaacucaaauuggugacguaaacguugaugguu        aauuuu    u     -     ucuaaaggaaaaaauuuuuuuacugaauaaa      - u          uc