Stem-loop mdm-MIR169e

Accession

MI0023171

Description

Malus domestica mdm-MIR169e precursor miRNA

Literature search

4 open access papers mention mdm-MIR169e
(9 sentences)

Sequence

992 reads, 265.0 reads per million, 32 experiments

gaguguauaacaugaagagaagagcguuguuuggUAGCCAAGGAUGACUUGCCUGcumccucuccuaauucuaauccaauccaauccaagaggaguccuacguuguuggguuucccagcagcaggcaccagGCAGGUCUCCUUUGGCUAACUUGacagccucuucuucucaugcuauacccuu
(((.(((((.(((((.((((((((.((((((.(((((((((((..((((((((((...((((((((........................)))))......(((((((((...))))))))))))...))))))))))..)))))))).))).)))))))))))))).))))).))))).)))

Structure

   u     a     a        c      u   -        AU          cum   cuccuaauucuaauccaauccaauccaagaggaguccuac         u 
gag guaua cauga gagaagag guuguu ggU AGCCAAGG  GACUUGCCUG   ccu                                        guuguuggg  
||| ||||| ||||| |||||||| |||||| ||| ||||||||  ||||||||||   |||                                        ||||||||| u
uuc cauau guacu uucuucuc cgacaG UCA UCGGUUUC  CUGGACGgac   gga                                        cgacgaccc  
   c     c     c        -      U   A        CU          cac   ----------------------------------------         u 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR169e-5p

• Accession: MIMAT0026067
• Description: Malus domestica mdm-miR169e-5p mature miRNA
• Sequence: 35 - UAGCCAAGGAUGACUUGCCUG - 55
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR169e-3p

• Accession: MIMAT0056734
• Description: Malus domestica mdm-miR169e-3p mature miRNA
• Sequence: 132 - GCAGGUCUCCUUUGGCUAACUUG - 154
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47