Stem-loop mdm-MIR7124b

Accession

MI0023159

Description

Malus domestica mdm-MIR7124b precursor miRNA

Literature search

3 open access papers mention mdm-MIR7124b
(4 sentences)

Sequence

4264 reads, 294.0 reads per million, 26 experiments

auuaagcuaauaacauuauauaggacaCACCAAUAUCAACUUUAUUUGuucauuaauacuuauaaagucauuacacuagaauuuucuuugaaagaaaauucuaguguauugacuuuauaaguauuaauggcuuugguauuaauuaaugaacaAAUAAAGUUGAUAUUGGUGUGUcgucuauaaugucauuagcuuaau
(((((((((((.((((((((.(.(((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((...))))))))))))))))).)))))))))))))))(((((.(...).)))))..)))))))))))))))))))))))))))))))).).)))))))).)))))))))))

Structure

           a        u g                                -------------------               u                 u 
auuaagcuaau acauuaua a gacaCACCAAUAUCAACUUUAUUUGuucauua                   auacuuauaaaguca uacacuagaauuuucuu  
||||||||||| |||||||| | ||||||||||||||||||||||||||||||||                   ||||||||||||||| ||||||||||||||||| g
uaauucgauua uguaauau u cUGUGUGGUUAUAGUUGAAAUAAacaaguaau                   uaugaauauuucagu augugaucuuaaaagaa  
           c        c g                                uaauuaugguuucgguaau               u                 a 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR7124b-5p

• Accession: MIMAT0026055
• Description: Malus domestica mdm-miR7124b-5p mature miRNA
• Sequence: 28 - CACCAAUAUCAACUUUAUUUG - 48
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7124b-3p

• Accession: MIMAT0056726
• Description: Malus domestica mdm-miR7124b-3p mature miRNA
• Sequence: 153 - AAUAAAGUUGAUAUUGGUGUGU - 174
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47