Stem-loop mdm-MIR5225c

Accession

MI0023156

Description

Malus domestica mdm-MIR5225c precursor miRNA

Literature search

5 open access papers mention mdm-MIR5225c
(11 sentences)

Sequence

3420 reads, 250.0 reads per million, 26 experiments

ucgaaauaucaaaucgucgggacuUCUGUCGUGGGUGAGAUGGUGCcgaugccacguaauucggggcagcgagcUUCAUCUCUCCUCGACAGAAGccucuaaugcuuugauucuacaga
.......((((((.(((.(((.(((((((((.(((.(((((((.((((.((((.((.....)).)))).)).)).))))))).)))))))))))))))...))).))))))........

Structure

-ucgaaau      u   --c   a         U   U       U  -  a    a  u 
        aucaaa cgu   ggg cuUCUGUCG GGG GAGAUGG GC cg ugcc cg a
        |||||| |||   ||| ||||||||| ||| ||||||| || || |||| || a
        uaguuu gua   ucc GAAGACAGC UCC CUCUACU cg gc acgg gc u
agacaucu      c   auc   -         -   U       U  a  g    g  u 

Annotation confidence High

Genome context

MDC011178.406: 16627-16745 [-]

Mature mdm-miR5225c-5p

• Accession: MIMAT0026052
• Description: Malus domestica mdm-miR5225c-5p mature miRNA
• Sequence: 25 - UCUGUCGUGGGUGAGAUGGUGC - 46
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR5225c-3p

• Accession: MIMAT0056723
• Description: Malus domestica mdm-miR5225c-3p mature miRNA
• Sequence: 75 - UUCAUCUCUCCUCGACAGAAG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47