Stem-loop mdm-MIR7121c

Accession

MI0023146

Description

Malus domestica mdm-MIR7121c precursor miRNA

Literature search

1 open access papers mention mdm-MIR7121c
(1 sentences)

Sequence

103604 reads, 8076.0 reads per million, 27 experiments

uauuaccauckUCCUCUUGGUGAUCGCCCUGUcccauauguccuucuggauucagggucugcauauggacagguguccuucuggauucagggucugcauAUGGACAGGGUGAUUACCAAGgugaugacgguaaua
(((((((.((.((.((((((((((((((((((((.((((((..((((((((((((((.........((((....))))))))))))))))))...)))))))))))))))))))))))))).)).)).)))))))

Structure

       a  k  C                    c      -cc              ucugcauau    a 
uauuacc uc UC UCUUGGUGAUCGCCCUGUcc auaugu   uucuggauucaggg         ggac g
||||||| || || |||||||||||||||||||| ||||||   ||||||||||||||         ||||  
auaaugg ag ag gGAACCAUUAGUGGGACAGG UAuacg   gggacuuaggucuu         ccug g
       c  u  u                    -      ucu              ---------    u 

Annotation confidence Medium

Genome context

Unknown

Mature mdm-miR7121c-5p

• Accession: MIMAT0026042
• Description: Malus domestica mdm-miR7121c-5p mature miRNA
• Sequence: 12 - UCCUCUUGGUGAUCGCCCUGU - 32
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7121c-3p

• Accession: MIMAT0056713
• Description: Malus domestica mdm-miR7121c-3p mature miRNA
• Sequence: 100 - AUGGACAGGGUGAUUACCAAG - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47