Stem-loop mdm-MIR7121b

Accession

MI0023145

Description

Malus domestica mdm-MIR7121b precursor miRNA

Literature search

1 open access papers mention mdm-MIR7121b
(1 sentences)

Sequence

100124 reads, 7934.0 reads per million, 27 experiments

caauucccagaccugaccggagccgccguagaaauauuacuauuaccauccUCCUCUUGGUGAUCGCCCUGUcgcauauggcuucuggauucagggccuguacagggugauuaccaaagggaugACGGUAAUAUUUAAUUCAUgauguuggcaaacucgucggagggaaaug
...(((((....(((((.((.((((.(((......((((.(((((((.((.((((.((((((((((((((((.(((...((((.(((....)))))))))))))))))))))))))).)))).)).)))))))..)))).....))).))))...)).))))).)))))...

Structure

caa     agac     c  --a    c   agaaau    -c       a  c    C                c   uau    u   g 
   uuccc    cugac gg   gccg cgu      auua  uauuacc uc UCCU UUGGUGAUCGCCCUGU gca   ggcu cug a
   |||||    ||||| ||   |||| |||      ||||  ||||||| || |||| |||||||||||||||| |||   |||| |||  
   aaggg    ggcug uc   cggu gua      UAAU  AUAAUGG Ag aggg aaccauuagugggaca ugu   ccgg gac u
gua     ---a     c  aaa    u   -gUACU    UU       C  u    a                -   ---    -   u 

Annotation confidence Not enough data

Genome context

MDC009272.711: 1182-1353 [-]

Mature mdm-miR7121b-5p

• Accession: MIMAT0026041
• Description: Malus domestica mdm-miR7121b-5p mature miRNA
• Sequence: 52 - UCCUCUUGGUGAUCGCCCUGU - 72
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7121b-3p

• Accession: MIMAT0056712
• Description: Malus domestica mdm-miR7121b-3p mature miRNA
• Sequence: 125 - ACGGUAAUAUUUAAUUCAU - 143
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47