Stem-loop mdm-MIR408c

Accession

MI0023136

Description

Malus domestica mdm-MIR408c precursor miRNA

Literature search

4 open access papers mention mdm-MIR408c
(17 sentences)

Sequence

18916 reads, 888.0 reads per million, 24 experiments

aaguauuugaguaaugcggaaagagaguuaauaagACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucaugcacugccuruuccCUGGCUUUGCCUCCCUCUCcuuccuuuuucucauccucuu
(((....((((.((...((((.(((((.....(((.(((((((.((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))).))))))).))).......))))).))))...))))))....)))

Structure

   uauu    u  ugc    a     --uuaau   A       G      A      a       cu       aaa 
aag    ugag aa   ggaa gagag       aag CAGGGAA AGGUAG GCAUGg uggaguu  caagagc   a
|||    |||| ||   |||| |||||       ||| ||||||| |||||| |||||| |||||||  |||||||    
uuc    acuc uu   ccuu CUCUC       UUC GUCccuu uccguc cguacu aucucag  guucucg   u
   uccu    -  uuu    c     CCUCCGU   G       r      a      c       -u       aga 

Annotation confidence Low

Genome context

Unknown

Mature mdm-miR408c-5p

• Accession: MIMAT0026032
• Description: Malus domestica mdm-miR408c-5p mature miRNA
• Sequence: 36 - ACAGGGAAGAGGUAGAGCAUG - 56
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR408c-3p

• Accession: MIMAT0056705
• Description: Malus domestica mdm-miR408c-3p mature miRNA
• Sequence: 117 - CUGGCUUUGCCUCCCUCUC - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47