Stem-loop mdm-MIR535d

Accession

MI0023131

Description

Malus domestica mdm-MIR535d precursor miRNA

Literature search

6 open access papers mention mdm-MIR535d
(12 sentences)

Sequence

28438 reads, 1236.0 reads per million, 27 experiments

gauguugugUGACGACGAGAGAGAGCACGCuugucaucacccaugaaaggaucaugguuguuuacgggcGUGCUCUUUCUUGUUGUCAUAaaguc
(((....(((((((((((((((((((((((((((...((.((((((.....)))))).))...)))))))))))))))))))))))))))..)))

Structure

   guug                           cau  c      a 
gau    ugUGACGACGAGAGAGAGCACGCuugu   ca ccauga a
|||    |||||||||||||||||||||||||||   || |||||| g
cug    AUACUGUUGUUCUUUCUCGUGcgggca   gu gguacu g
   --aa                           uuu  u      a 

Annotation confidence High

Genome context

MDC011049.358: 3593-3687 [+]

Mature mdm-miR535d-5p

• Accession: MIMAT0026027
• Description: Malus domestica mdm-miR535d-5p mature miRNA
• Sequence: 10 - UGACGACGAGAGAGAGCACGC - 30
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR535d-3p

• Accession: MIMAT0056701
• Description: Malus domestica mdm-miR535d-3p mature miRNA
• Sequence: 70 - GUGCUCUUUCUUGUUGUCAUA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47