Stem-loop mdm-MIR535b

Accession

MI0023129

Description

Malus domestica mdm-MIR535b precursor miRNA

Literature search

6 open access papers mention mdm-MIR535b
(12 sentences)

Sequence

5336 reads, 274.0 reads per million, 22 experiments

gauguugugUGACAAGGAGAGAGAGCACGCuugucaucacccaugaacggaucaugguuguuuacgggCGUGCUCUCUCUUCUUGUCAUAcgguc
....((((((((((((((((((((((((((((((...((.((((((.....)))))).))...))))))))))))))))))))))))))))))..

Structure

gaug                              cau  c      a 
    uugugUGACAAGGAGAGAGAGCACGCuugu   ca ccauga c
    ||||||||||||||||||||||||||||||   || |||||| g
    ggcAUACUGUUCUUCUCUCUCGUGCgggca   gu gguacu g
--cu                              uuu  u      a 

Annotation confidence High

Genome context

MDC005729.245: 16577-16671 [-]

Mature mdm-miR535b-5p

• Accession: MIMAT0026025
• Description: Malus domestica mdm-miR535b-5p mature miRNA
• Sequence: 10 - UGACAAGGAGAGAGAGCACGC - 30
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR535b-3p

• Accession: MIMAT0056699
• Description: Malus domestica mdm-miR535b-3p mature miRNA
• Sequence: 69 - CGUGCUCUCUCUUCUUGUCAUA - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47