Stem-loop mdm-MIR477b

Accession

MI0023124

Description

Malus domestica mdm-MIR477b precursor miRNA

Literature search

2 open access papers mention mdm-MIR477b
(4 sentences)

Sequence

804 reads, 288.0 reads per million, 24 experiments

caaggcauuuuuguugcucACUCUCCCUCAAGGGCUUCGACcaaugucagacaugrcgagcuCGAAGACUUGGGGAGAGUGAAuaaaaagugucuug
((((((((((((.....((((((((((.((((..((((((.(..((.((....)).)).).)))))).))))))))))))))...))))))))))))

Structure

            guugc          U    GG      C aa  u  g 
caaggcauuuuu     ucACUCUCCC CAAG  CUUCGA c  ug ca a
||||||||||||     |||||||||| ||||  |||||| |  || ||  
guucugugaaaa     AGUGAGAGGG GUUC  GAAGCu g  gc gu c
            --auA          -    -A      c -a  r  a 

Annotation confidence High

Genome context

MDC024949.20: 9572-9668 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR477b

Mature mdm-miR477b-5p

• Accession: MIMAT0026020
• Description: Malus domestica mdm-miR477b-5p mature miRNA
• Sequence: 20 - ACUCUCCCUCAAGGGCUUCGAC - 41
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR477b-3p

• Accession: MIMAT0056695
• Description: Malus domestica mdm-miR477b-3p mature miRNA
• Sequence: 63 - CGAAGACUUGGGGAGAGUGAA - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47