Stem-loop mdm-MIR3627c

Accession

MI0023122

Description

Malus domestica mdm-MIR3627c precursor miRNA

Literature search

4 open access papers mention mdm-MIR3627c
(9 sentences)

Sequence

1087 reads, 75.0 reads per million, 30 experiments

ggggauuuauguUCGCAGGAGAGAUGGCACUAauuguacugcaauugcgucaacaauuGUUGCCAUCUCUCCUGUGACCaaaaaucucu
((((((((.((.(((((((((((((((((.(((((((..(((....)))...))))))).))))))))))))))))).)).))))))))

Structure

        a  u                 C       -ac   a 
ggggauuu ug UCGCAGGAGAGAUGGCA UAauugu   ugc a
|||||||| || ||||||||||||||||| |||||||   |||  
ucucuaaa aC AGUGUCCUCUCUACCGU Guuaaca   gcg u
        a  C                 U       acu   u 

Annotation confidence High

Genome context

MDC006958.369: 10898-10986 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR3627c

Mature mdm-miR3627c-5p

• Accession: MIMAT0026018
• Description: Malus domestica mdm-miR3627c-5p mature miRNA
• Sequence: 13 - UCGCAGGAGAGAUGGCACUA - 32
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR3627c-3p

• Accession: MIMAT0056693
• Description: Malus domestica mdm-miR3627c-3p mature miRNA
• Sequence: 59 - GUUGCCAUCUCUCCUGUGACC - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47