Stem-loop mdm-MIR2111b

Accession

MI0023119

Description

Malus domestica mdm-MIR2111b precursor miRNA

Literature search

2 open access papers mention mdm-MIR2111b
(2 sentences)

Sequence

671 reads, 46.0 reads per million, 27 experiments

gauauuggguuaggauugggUAAUCUGCAUCCUGAGGUUUAgaucagcacacacguaacuguuguaucuagUCCUUGGGAUGCAGAUUACCUUGuccucaccgccaaugc
..((((((((.(((((.((((((((((((((((((((.(((((((((((..........))))).)))))).)))))))))))))))))))).))))).))..)))))).

Structure

ga      --  u     u                    U      -     caca 
  uauugg  gu aggau gggUAAUCUGCAUCCUGAGG UUAgau cagca    c
  ||||||  || ||||| |||||||||||||||||||| |||||| |||||     
  guaacc  ca uccuG UCCAUUAGACGUAGGGUUCC gaucua guugu    g
-c      gc  c     U                    U      u     caau 

Annotation confidence Low

Genome context

MDC000075.131: 9757-9866 [-]

Mature mdm-miR2111b-5p

• Accession: MIMAT0026015
• Description: Malus domestica mdm-miR2111b-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUA - 41
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR2111b-3p

• Accession: MIMAT0056692
• Description: Malus domestica mdm-miR2111b-3p mature miRNA
• Sequence: 72 - UCCUUGGGAUGCAGAUUACCUUG - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47