Stem-loop mdm-MIR2111a

Accession

MI0023118

Description

Malus domestica mdm-MIR2111a precursor miRNA

Literature search

2 open access papers mention mdm-MIR2111a
(2 sentences)

Sequence

674 reads, 46.0 reads per million, 27 experiments

gguuaggauugggUAAUCUGCAUCCUGAGGUUUAgaucagcacacacguauuuguuguaucuagUCCUUGGGAUGCAGAUUACCUUGuccuugcc
(((.(((((.((((((((((((((((((((.(((((((((((..........))))).)))))).)))))))))))))))))))).))))).)))

Structure

   u     u                    U      -     caca 
ggu aggau gggUAAUCUGCAUCCUGAGG UUAgau cagca    c
||| ||||| |||||||||||||||||||| |||||| |||||     
ccg uccuG UCCAUUAGACGUAGGGUUCC gaucua guugu    g
   u     U                    U      u     uuau 

Annotation confidence Low

Genome context

MDC000075.129: 2663-2757 [+]

Mature mdm-miR2111a-5p

• Accession: MIMAT0026014
• Description: Malus domestica mdm-miR2111a-5p mature miRNA
• Sequence: 14 - UAAUCUGCAUCCUGAGGUUUA - 34
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR2111a-3p

• Accession: MIMAT0056691
• Description: Malus domestica mdm-miR2111a-3p mature miRNA
• Sequence: 65 - UCCUUGGGAUGCAGAUUACCUUG - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47