Stem-loop mdm-MIR399j

Accession

MI0023114

Description

Malus domestica mdm-MIR399j precursor miRNA

Literature search

6 open access papers mention mdm-MIR399j
(8 sentences)

Sequence

12251 reads, 996.0 reads per million, 31 experiments

ucuaauaagcaaaucagucauaGGGCUCCUCCCUCUUGGCAGGcacugguguauggugcaacuacagucacuuucauugaccUGCCAAAGGAGAGUUGCCCUGcgauugcuuuggcuuaauga
.....((((((((.(((((.((((((..((((((.((((((((((..((((..((.........))..)))).....)).))))))))))).)))..)))))).))))).))).)))))....

Structure

ucuaa     -   u     a      UC   -   C        -  ---cu    ua  gug 
     uaagc aaa caguc uaGGGC  CUC CCU UUGGCAGG ca     ggug  ug   c
     ||||| ||| ||||| ||||||  ||| ||| |||||||| ||     ||||  ||   a
     auucg uuu guuag GUCCCG  GAG GGA AACCGUcc gu     ucac  ac   a
-agua     g   c     c      UU   A   -        a  uacuu    ug  auc 

Annotation confidence High

Genome context

MDC001015.251: 15588-15710 [+]

Mature mdm-miR399j-5p

• Accession: MIMAT0056687
• Description: Malus domestica mdm-miR399j-5p mature miRNA
• Sequence: 23 - GGGCUCCUCCCUCUUGGCAGG - 43
• Evidence: experimental ; unknown

Mature mdm-miR399j-3p

• Accession: MIMAT0026010
• Description: Malus domestica mdm-miR399j-3p mature miRNA
• Sequence: 83 - UGCCAAAGGAGAGUUGCCCUG - 103
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47