Stem-loop mdm-MIR399a

Accession

MI0023105

Description

Malus domestica mdm-MIR399a precursor miRNA

Literature search

7 open access papers mention mdm-MIR399a
(9 sentences)

Sequence

16483 reads, 1273.0 reads per million, 26 experiments

ugaauaacaGUGCAAUUCUCCUUUGGCAGAagucauucuggugcauauacucuugaguacuaucgcuggaugcauauauaugcuuucUGCCAAAGGAGAAUUGCCCUGcaauuca
(((((..(((.(((((((((((((((((((((....(((((((.(((((((....)))).)))))))))).((((....))))))))))))))))))))))))).)))..)))))

Structure

     aa   U                     ---------ucau       c   -    c 
ugaau  caG GCAAUUCUCCUUUGGCAGAag             ucuggug aua uacu u
|||||  ||| |||||||||||||||||||||             ||||||| ||| ||||  
acuua  GUC CGUUAAGAGGAAACCGUcuuu             aggucgc uau auga u
     ac   C                     cguauauauacgu       -   c    g 

Annotation confidence High

Genome context

MDC012194.254: 2496-2610 [+]

Mature mdm-miR399a-5p

• Accession: MIMAT0056679
• Description: Malus domestica mdm-miR399a-5p mature miRNA
• Sequence: 10 - GUGCAAUUCUCCUUUGGCAGA - 30
• Evidence: experimental ; unknown

Mature mdm-miR399a-3p

• Accession: MIMAT0026001
• Description: Malus domestica mdm-miR399a-3p mature miRNA
• Sequence: 88 - UGCCAAAGGAGAAUUGCCCUG - 108
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47