Stem-loop mdm-MIR398c

Accession

MI0023104

Description

Malus domestica mdm-MIR398c precursor miRNA

Literature search

5 open access papers mention mdm-MIR398c
(26 sentences)

Sequence

722520 reads, 25996.0 reads per million, 29 experiments

gcgguagagggguucugcaGGAGUGACCUGAGAUCACAUAUGGcguuauguguugcgcuugaUGUGUUCUCAGGUCGCCCCUGcgguaccuucucuaccac
..(((((((((((.(((((((.(((((((((((.(((((..(((((........)))))..))))).))))))))))).))))))).))).))))))))..

Structure

gc        -   u       A           U     AU     uau 
  gguagagg ggu cugcaGG GUGACCUGAGA CACAU  GGcgu   g
  |||||||| ||| ||||||| ||||||||||| |||||  |||||    
  ccaucucu cca ggcGUCC CGCUGGACUCU GUGUa  ucgcg   u
ca        u   u       C           U     gu     uug 

Annotation confidence High

Genome context

MDC015053.133: 10556-10656 [-]

Mature mdm-miR398c-5p

• Accession: MIMAT0056678
• Description: Malus domestica mdm-miR398c-5p mature miRNA
• Sequence: 20 - GGAGUGACCUGAGAUCACAUAUGG - 43
• Evidence: experimental ; unknown

Mature mdm-miR398c-3p

• Accession: MIMAT0026000
• Description: Malus domestica mdm-miR398c-3p mature miRNA
• Sequence: 63 - UGUGUUCUCAGGUCGCCCCUG - 83
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47