Stem-loop mdm-MIR397b

Accession

MI0023101

Description

Malus domestica mdm-MIR397b precursor miRNA

Literature search

3 open access papers mention mdm-MIR397b
(10 sentences)

Sequence

154851 reads, 5348.0 reads per million, 31 experiments

ccagauugaagaaacaucaUUGAGUGCAGCGUUGAUGAAAguucguauugcuucugaaucuucauuaggacaucgaaacauuucAUCAACGCUGCACCCAAUUAUguuucuauccauuuugg
(((((.((.((((((((.((((.((((((((((((((((((((((...(.((..(((....)))..)).)...)).))).))))))))))))))))).)))).))))))))...)).)))))

Structure

     u  --a        c    A                 -   -  uau g  uc   a 
ccaga ug   agaaacau aUUG GUGCAGCGUUGAUGAAA guu cg   u cu  uga u
||||| ||   |||||||| |||| ||||||||||||||||| ||| ||   | ||  |||  
gguuu ac   ucuuugUA UAAC CACGUCGCAACUAcuuu caa gc   a ga  acu c
     u  cua        U    C                 a   a  uac g  uu   u 

Annotation confidence Medium

Genome context

MDC000270.326: 755-876 [+]

Mature mdm-miR397b-5p

• Accession: MIMAT0025997
• Description: Malus domestica mdm-miR397b-5p mature miRNA
• Sequence: 20 - UUGAGUGCAGCGUUGAUGAAA - 40
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR397b-3p

• Accession: MIMAT0056675
• Description: Malus domestica mdm-miR397b-3p mature miRNA
• Sequence: 85 - AUCAACGCUGCACCCAAUUAU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47