Stem-loop mdm-MIR396b

Accession

MI0023094

Description

Malus domestica mdm-MIR396b precursor miRNA

Literature search

9 open access papers mention mdm-MIR396b
(39 sentences)

Sequence

476607 reads, 27036.0 reads per million, 32 experiments

gaagaugaugauccucuuuguauucUUCCACAGCUUUCUUGAACUGcauccaucuauggcgagaucgaccgaucuuuggagugagucgacucaguaucucuauuccccuuaacuugguuugcgGUUCAAUAAAGCUGUGGGAAGauacagauaggcucaauaaaauuc
........(((.(((.((((((((.((((((((((((.((((((((((.(((.....((.((((((....)))))).((((((((............))).)))))))......)))..)))))))))).)))))))))))).)))))))).))).))).........

Structure

-gaagauga   u   c        c            C          -u   -ucuau  cgagaucgaccgaucuuu     -   ucgac 
         uga ccu uuuguauu UUCCACAGCUUU UUGAACUGca  cca      gg                  ggagu gag     u
         ||| ||| |||||||| |||||||||||| ||||||||||  |||      ||                  ||||| |||      
         acu gga agacauaG AGGGUGUCGAAA AACUUGgcgu  ggu      cc                  ccuua cuc     c
cuuaaaaua   c   u        A            U          uu   ucaauu  ------------------     u   uauga 

Annotation confidence High

Genome context

MDC016069.205: 14552-14719 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR396b

Mature mdm-miR396b-5p

• Accession: MIMAT0025990
• Description: Malus domestica mdm-miR396b-5p mature miRNA
• Sequence: 26 - UUCCACAGCUUUCUUGAACUG - 46
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396b-3p

• Accession: MIMAT0056668
• Description: Malus domestica mdm-miR396b-3p mature miRNA
• Sequence: 124 - GUUCAAUAAAGCUGUGGGAAG - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47