Stem-loop mdm-MIR396a

Accession

MI0023093

Description

Malus domestica mdm-MIR396a precursor miRNA

Literature search

8 open access papers mention mdm-MIR396a
(38 sentences)

Sequence

856220 reads, 37788.0 reads per million, 32 experiments

gauccucuuuguauucUUCCACAGCUUUCUUGAACAGcauccauguaugacgagaucgaccgaucuuuggagugagucgacucagucucucuauuccucuuaacuugguuugcgGUUCAAUAAAGCUGUGGGAAGauacagauaggcuc
((.(((.((((((((.((((((((((((.((((((.(((.(((.((.....((((((....)))))).((((((((..(((...))).))).))))).....)).)))..))).)))))).)))))))))))).)))))))).))).))

Structure

  u   c        c            C      A   -u   u  augacgagaucgaccgaucuuu     -   uc   u 
ga ccu uuuguauu UUCCACAGCUUU UUGAAC Gca  cca gu                      ggagu gag  gac  
|| ||| |||||||| |||||||||||| |||||| |||  ||| ||                      ||||| |||  ||| c
cu gga agacauaG AGGGUGUCGAAA AACUUG cgu  ggu ca                      ccuua cuc  cug  
  c   u        A            U      g   uu   u  -----------------auucu     u   -u   a 

Annotation confidence High

Genome context

MDC003523.387: 32684-32832 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR396a

Mature mdm-miR396a-5p

• Accession: MIMAT0025989
• Description: Malus domestica mdm-miR396a-5p mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACAG - 37
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396a-3p

• Accession: MIMAT0056667
• Description: Malus domestica mdm-miR396a-3p mature miRNA
• Sequence: 115 - GUUCAAUAAAGCUGUGGGAAG - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47