Stem-loop mdm-MIR395a

Accession

MI0023084

Description

Malus domestica mdm-MIR395a precursor miRNA

Literature search

5 open access papers mention mdm-MIR395a
(51 sentences)

Sequence

94969 reads, 3708.0 reads per million, 32 experiments

ccuagaGUUCCCCCGAAUACUUCAUUaggaucgauacauaaauucuuugaaggauugcaccgucucuaCUGAAGUGUUUGGGGGAACUCcggg
(((.((((((((((((((((((((.((((...(((.....((((((....)))))).....))))))).)))))))))))))))))))).)))

Structure

   a                    U    auc   acaua      u 
ccu gaGUUCCCCCGAAUACUUCA Uagg   gau     aauucu u
||| |||||||||||||||||||| ||||   |||     ||||||  
ggg CUCAAGGGGGUUUGUGAAGU aucu   cug     uuagga g
   c                    C    ---   ccacg      a 

Annotation confidence High

Genome context

MDC003768.152: 26163-26255 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR395a

Mature mdm-miR395a-5p

• Accession: MIMAT0056662
• Description: Malus domestica mdm-miR395a-5p mature miRNA
• Sequence: 7 - GUUCCCCCGAAUACUUCAUU - 26
• Evidence: experimental ; unknown

Mature mdm-miR395a-3p

• Accession: MIMAT0025980
• Description: Malus domestica mdm-miR395a-3p mature miRNA
• Sequence: 69 - CUGAAGUGUUUGGGGGAACUC - 89
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47