Stem-loop mdm-MIR394b

Accession

MI0023083

Description

Malus domestica mdm-MIR394b precursor miRNA

Literature search

4 open access papers mention mdm-MIR394b
(13 sentences)

Sequence

24750 reads, 3201.0 reads per million, 32 experiments

gggucucguagcuagcucuguaaacguggaugaucacguggguuucgcaaagcguuucuuacagaguucuUUGGCAUUCUGUCCACCUCCucuuucuucgaucucuuucucccucucuugcuguguauguaugugguuuaauggauggaggugggcauacugccaacagaGUUCUGUUGGAUUCUCUUUGUaaaacccucgugaguguauauauguaucguuacgcaguacucgaucc
(((((..(((.((.((...(((((((((.....(((((.((((((.((((((.(..(((.((((((((((((((((...((((((((((((((......((((.(...........................).))))....))).)))))))))))...)))))).)))))))))).)))..).)))))).)))))).))))).......)))))....)))))))))))..)))))

Structure

     uc   g  a  ucu    ----     --gauga     u      c      c uu   u          -      UUC           -   uucuuc    u uuucucccucuc 
ggguc  gua cu gc   guaa    acgug       ucacg ggguuu gcaaag g  ucu acagaguucu UUGGCA   UGUCCACCUCC ucu      gauc c            u
|||||  ||| || ||   ||||    |||||       ||||| |||||| |||||| |  ||| |||||||||| ||||||   ||||||||||| |||      |||| |            u
ccuag  cau ga cg   cauu    uguau       agugc cccaaa UGUUUC C  AGG UGUCUUGaga aaccgu   acggguggagg agg      uugg g            g
     cu   -  -  ---    gcua     auaugug     u      a      U UU   U          c      cau           u   --uaau    u uauguauguguc 

Annotation confidence Low

Genome context

MDC005660.433: 19401-19638 [-]

Mature mdm-miR394b-5p

• Accession: MIMAT0025979
• Description: Malus domestica mdm-miR394b-5p mature miRNA
• Sequence: 71 - UUGGCAUUCUGUCCACCUCC - 90
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR394b-3p

• Accession: MIMAT0056661
• Description: Malus domestica mdm-miR394b-3p mature miRNA
• Sequence: 171 - GUUCUGUUGGAUUCUCUUUGU - 191
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47