Stem-loop mdm-MIR390c

Accession

MI0023075

Description

Malus domestica mdm-MIR390c precursor miRNA

Literature search

5 open access papers mention mdm-MIR390c
(39 sentences)

Sequence

33384 reads, 8711.0 reads per million, 31 experiments

aguaagggaggaucuguaAAGCUCAGGAGGGAUAGCGCCagaugaauuaaccaagauucuaacaauuaagcguuuauuuggucaucaucugaUGCUAUCCAUCCUGAGUUUCAUGGcuucuucuuacu
(((((((.((((.((((.((((((((((.((((((((.(((((((....((((((.....(((........)))..))))))..))))))).)))))))).)))))))))).)))).)))))))))))

Structure

       g    u    a          G        C       auua      auucu   aau 
aguaagg agga cugu AAGCUCAGGA GGAUAGCG Cagauga    accaag     aac   u
||||||| |||| |||| |||||||||| |||||||| |||||||    ||||||     |||    
ucauucu ucuu GGUA UUUGAGUCCU CCUAUCGU gucuacu    ugguuu     uug   a
       -    c    C          A        a       --ac      ---au   cga 

Annotation confidence Medium

Genome context

MDC001220.292: 9552-9679 [+]

Mature mdm-miR390c-5p

• Accession: MIMAT0025971
• Description: Malus domestica mdm-miR390c-5p mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR390c-3p

• Accession: MIMAT0056654
• Description: Malus domestica mdm-miR390c-3p mature miRNA
• Sequence: 93 - UGCUAUCCAUCCUGAGUUUCAUGG - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47