Stem-loop mdm-MIR390b

Accession

MI0023074

Description

Malus domestica mdm-MIR390b precursor miRNA

Literature search

5 open access papers mention mdm-MIR390b
(39 sentences)

Sequence

35398 reads, 8610.0 reads per million, 32 experiments

guguggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauucucgguuugguuuaaccacauauagCGCUAUCCAUCCUGAGUUUCAUGGcuucuucuuacac
(((((((((((.((((.((((((((((.(((((((((.((....((((......))))....)).))))))))).)))))))))).)))).)))))).)))))

Structure

     -      u    u          G         C  ucuc    ug 
gugug gaagaa cugu AAGCUCAGGA GGAUAGCGC au    gguu  g
||||| |||||| |||| |||||||||| ||||||||| ||    ||||   
cacau cuucuu GGUA UUUGAGUCCU CCUAUCGCg ua    ccaa  u
     u      c    C          A         a  uaca    uu 

Annotation confidence Medium

Genome context

MDC018186.206: 2564-2666 [-]

Mature mdm-miR390b-5p

• Accession: MIMAT0025970
• Description: Malus domestica mdm-miR390b-5p mature miRNA
• Sequence: 18 - AAGCUCAGGAGGGAUAGCGCC - 38
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR390b-3p

• Accession: MIMAT0056653
• Description: Malus domestica mdm-miR390b-3p mature miRNA
• Sequence: 67 - CGCUAUCCAUCCUGAGUUUCAUGG - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47