Stem-loop mdm-MIR390a

Accession

MI0023073

Description

Malus domestica mdm-MIR390a precursor miRNA

Literature search

5 open access papers mention mdm-MIR390a
(39 sentences)

Sequence

35564 reads, 8883.0 reads per million, 31 experiments

aguaagggagaaucuguaAAGCUCAGGAGGGAUAGCGCCauaugaacaaagggucuauuuacuaggugggcguuucuuuguucaucaugCGCUAUCCAUCCUGAGUUUCAUGGcuucuucauacu
((((..((((((.((((.((((((((((.(((((((((...(((((((((((((((((((...))))))))...)))))))))))...))))))))).)))))))))).)))).)))))).))))

Structure

    ag      u    a          G         Cau           ---        a 
agua  ggagaa cugu AAGCUCAGGA GGAUAGCGC   augaacaaagg   gucuauuu  
||||  |||||| |||| |||||||||| |||||||||   |||||||||||   |||||||| c
ucau  cuucuu GGUA UUUGAGUCCU CCUAUCGCg   uacuuguuucu   cgggugga  
    -a      c    C          A         uac           uug        u 

Annotation confidence Medium

Genome context

MDC019512.230: 19835-19959 [+]

Mature mdm-miR390a-5p

• Accession: MIMAT0025969
• Description: Malus domestica mdm-miR390a-5p mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR390a-3p

• Accession: MIMAT0056652
• Description: Malus domestica mdm-miR390a-3p mature miRNA
• Sequence: 90 - CGCUAUCCAUCCUGAGUUUCAUGG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47