Stem-loop mdm-MIR319a

Accession

MI0023071

Description

Malus domestica mdm-MIR319a precursor miRNA

Literature search

6 open access papers mention mdm-MIR319a
(10 sentences)

Sequence

265455 reads, 26551.0 reads per million, 31 experiments

gcaguggugaagAGAGCUUUCUUUAGUCCAUUcauggguggcgacaggauuuaauuagcugccgagucauucauccaaauacuggguuauuagcucaggacgacacccaguaaaugugugaaugaagcgggagacaaauuggaucuugagcuuccuguacUUGGACUGAAGGGAGCUCCCUuaauuaauuacuuc
..((((((.(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..((((((((..((..(....)..)).))))))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).))).....))))))..

Structure

gc      ----g   A                 UUc     u   ga            a -  g   ag        c  aa        ua  ag u 
  aguggu     aag GAGCUUUCUUUAGUCCA   auggg ggc  caggauuuaauu g cu ccg  ucauucau ca  uacugggu  uu  c c
  ||||||     ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  ||||||||  ||  |  
  ucauua     uUC CUCGAGGGAAGUCAGGU   ugucc ucg  guucuagguuaa c ga ggc  aguaagug gu  augaccca  ag  g a
cu      auuaa   C                 Uca     u   -a            a a  g   ga        u  aa        -c  ca g 

Annotation confidence High

Genome context

MDC020913.219: 9978-10172 [-]

Mature mdm-miR319a-5p

• Accession: MIMAT0056651
• Description: Malus domestica mdm-miR319a-5p mature miRNA
• Sequence: 13 - AGAGCUUUCUUUAGUCCAUU - 32
• Evidence: experimental ; unknown

Mature mdm-miR319a-3p

• Accession: MIMAT0025967
• Description: Malus domestica mdm-miR319a-3p mature miRNA
• Sequence: 161 - UUGGACUGAAGGGAGCUCCCU - 181
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47