Stem-loop mdm-MIR172k

Accession

MI0023066

Description

Malus domestica mdm-MIR172k precursor miRNA

Literature search

14 open access papers mention mdm-MIR172k
(75 sentences)

Sequence

1200 reads, 131.0 reads per million, 32 experiments

agucaguauucgcggguGCAGCAUCAUCAAGAUUCACauacaggcaagggggcuaccuuuaucgaucgaguaaauuguuaccgcaccaauaagaauauuuccuucaacuuccuuuuguacuugaaagguaguuccuucgaagugGGAAUCUUGAUGAUGCUGCAUcagcugguacaugacu
((((((((((.((.(((((((((((((((((((((.(((...((...((((((((((((......(((((((..(((((........))))).........................)))))))))))))))))))))...))).))))))))))))))))))))).)).))))).)))))

Structure

     -     c  g                     A   aca  caa            uaucga       -----------------------aa     acc 
aguca guauu gc gguGCAGCAUCAUCAAGAUUC Cau   gg   gggggcuaccuu      ucgagua                         uuguu   g
||||| ||||| || ||||||||||||||||||||| |||   ||   ||||||||||||      |||||||                         |||||    
ucagu caugg cg cUACGUCGUAGUAGUUCUAAG gug   cu   uccuugauggaa      aguucau                         aauaa   c
     a     u  a                     G   aag  ---            ------       guuuuccuucaacuuccuuuauaag     cca 

Annotation confidence High

Genome context

MDC029352.33: 3377-3557 [+]

Mature mdm-miR172k-5p

• Accession: MIMAT0056648
• Description: Malus domestica mdm-miR172k-5p mature miRNA
• Sequence: 18 - GCAGCAUCAUCAAGAUUCAC - 37
• Evidence: experimental ; unknown

Mature mdm-miR172k-3p

• Accession: MIMAT0025962
• Description: Malus domestica mdm-miR172k-3p mature miRNA
• Sequence: 145 - GGAAUCUUGAUGAUGCUGCAU - 165
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47