Stem-loop mdm-MIR172h

Accession

MI0023063

Description

Malus domestica mdm-MIR172h precursor miRNA

Literature search

14 open access papers mention mdm-MIR172h
(78 sentences)

Sequence

11180 reads, 1805.0 reads per million, 30 experiments

gucguuguuugcggguGUGGCAUCAUCAAGAUUCACacaugcaauuaacugauaaaguuguuugaaagugAGAAUCUUGAUGAUGCUGCAUcggcaauaaaccac
...(((..((((.(((((((((((((((((((((.(((...(((.(((((.....))))).)))...))).))))))))))))))))))))).))))..)))...

Structure

guc   gu    g                     A   aug   u     g 
   guu  uugc gguGUGGCAUCAUCAAGAUUC Cac   caa uaacu a
   |||  |||| ||||||||||||||||||||| |||   ||| ||||| u
   caa  aacg cUACGUCGUAGUAGUUCUAAG gug   guu guuga a
cac   au    g                     A   aaa   u     a 

Annotation confidence High

Genome context

MDC010740.415: 456-560 [+]

Mature mdm-miR172h-5p

• Accession: MIMAT0056645
• Description: Malus domestica mdm-miR172h-5p mature miRNA
• Sequence: 17 - GUGGCAUCAUCAAGAUUCAC - 36
• Evidence: experimental ; unknown

Mature mdm-miR172h-3p

• Accession: MIMAT0025959
• Description: Malus domestica mdm-miR172h-3p mature miRNA
• Sequence: 71 - AGAAUCUUGAUGAUGCUGCAU - 91
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47