Stem-loop mdm-MIR171k

Accession

MI0023052

Description

Malus domestica mdm-MIR171k precursor miRNA

Literature search

9 open access papers mention mdm-MIR171k
(40 sentences)

Sequence

3633 reads, 190.0 reads per million, 26 experiments

gagaaagCGAUGUUGGUGAGGUUCAAUCcgaagacagauuuacacaucccugcuggcguaaauugaucucagaUUGAGCCGCGCCAAUAUCACUuucuu
(((((((.((((((((((.(((((((((.((.((..(((((((.....((....)).)))))))..)))).))))))))).)))))))))).)))))))

Structure

       C          A         c  a  ca       acauc  u 
gagaaag GAUGUUGGUG GGUUCAAUC ga ga  gauuuac     cc g
||||||| |||||||||| ||||||||| || ||  |||||||     ||  
uucuuUC CUAUAACCGC CCGAGUUag cu cu  uuaaaug     gg c
       A          G         a  -  ag       ----c  u 

Annotation confidence High

Genome context

MDC002905.342: 5466-5564 [-]

Mature mdm-miR171k-5p

• Accession: MIMAT0056637
• Description: Malus domestica mdm-miR171k-5p mature miRNA
• Sequence: 8 - CGAUGUUGGUGAGGUUCAAUC - 28
• Evidence: experimental ; unknown

Mature mdm-miR171k-3p

• Accession: MIMAT0025948
• Description: Malus domestica mdm-miR171k-3p mature miRNA
• Sequence: 74 - UUGAGCCGCGCCAAUAUCACU - 94
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47