Stem-loop mdm-MIR171i

Accession

MI0023050

Description

Malus domestica mdm-MIR171i precursor miRNA

Literature search

9 open access papers mention mdm-MIR171i
(40 sentences)

Sequence

10423 reads, 702.0 reads per million, 26 experiments

ugcaaaagcaaacauggUGUGAUAUUGGUUUUGGCUCAUAUcucugauaauuagcuuaucuucgaucauaaaucgucaugaugcacaacaaagacuaguacuacguacucuuugagaUGAGCCGAACCAAUAUCACUCuuguaugcuucuuugca
((((((((((.(((.((.(((((((((((((.(((((((......(((((.....)))))....(((((........)))))......((((((...((((...))))))))))..)))))))))))))))))))).))))).))))..))))))

Structure

      --    a   u  U             U       AUcucugauaauuagcuuaucuucgaucauaaaucgucaugaugcacaa      cua    u 
ugcaaa  agca aca gg GUGAUAUUGGUUU GGCUCAU                                                 caaaga   guac  
||||||  |||| ||| || ||||||||||||| |||||||                                                 ||||||   |||| a
acguuu  ucgu ugu uC CACUAUAACCAAG CCGAGUa                                                 guuucu   caug  
      cu    a   -  U             -       -----------------------------------------------ga      ---    c 

Annotation confidence High

Genome context

MDC018836.211: 24237-24391 [+]

Mature mdm-miR171i-5p

• Accession: MIMAT0056635
• Description: Malus domestica mdm-miR171i-5p mature miRNA
• Sequence: 18 - UGUGAUAUUGGUUUUGGCUCAUAU - 41
• Evidence: experimental ; unknown

Mature mdm-miR171i-3p

• Accession: MIMAT0025946
• Description: Malus domestica mdm-miR171i-3p mature miRNA
• Sequence: 118 - UGAGCCGAACCAAUAUCACUC - 138
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47