Stem-loop mdm-MIR171e

Accession

MI0023046

Description

Malus domestica mdm-MIR171e precursor miRNA

Literature search

9 open access papers mention mdm-MIR171e
(40 sentences)

Sequence

154528 reads, 5731.0 reads per million, 32 experiments

ugaaauaguuacugugaUGUUGGCCCGGUUUCACUCAGAgaggaagacugcuuacugcugcaucugcauguacguaggaacguacguugugguuggucuccugaaucUGAUUGAGCCGCGCCAAUAUCucagugcucuuuca
(((((.(((.((((.(((((((((.(((((.((.(((((.((((.(((.((.....))..((.((((((((((((....))))))).))))).)))))))))...))))).))))))).))))))))).))))))).)))))

Structure

     u   u    u         C     U  C     --g    a   ugcuuacugcug  u     -       a 
ugaaa agu acug gaUGUUGGC CGGUU CA UCAGA   agga gac            ca cugca uguacgu g
||||| ||| |||| ||||||||| ||||| || |||||   |||| |||            || ||||| |||||||  
acuuu ucg ugac CUAUAACCG GCCGA GU AGUcu   uccu cug            gu ggugu gcaugca g
     c   -    u         C     -  U     aag    -   ------------  u     u       a 

Annotation confidence High

Genome context

MDC015573.110: 10077-10218 [+]

Mature mdm-miR171e-5p

• Accession: MIMAT0056634
• Description: Malus domestica mdm-miR171e-5p mature miRNA
• Sequence: 18 - UGUUGGCCCGGUUUCACUCAGA - 39
• Evidence: experimental ; unknown

Mature mdm-miR171e-3p

• Accession: MIMAT0025942
• Description: Malus domestica mdm-miR171e-3p mature miRNA
• Sequence: 108 - UGAUUGAGCCGCGCCAAUAUC - 128
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47