Stem-loop mdm-MIR169a

Accession

MI0023038

Description

Malus domestica mdm-MIR169a precursor miRNA

Literature search

5 open access papers mention mdm-MIR169a
(10 sentences)

Sequence

1132 reads, 119.0 reads per million, 32 experiments

aagucucagaguguuugcaucaagcagaagagaucggaaugCAGCCAAGGAUGACUUGCCGGcuuuuacaguaucuugcucuaaucagcagagucuugcCGGCAAGUUGCUCUUGGCUACauuuagcucucuuccucuaaugucagccucugagauuu
(((((((((((.(((.((((..((..(((((((.(.(((((.((((((((.((((((((((((......((..(((.(((......))))))..)).)))))))))))).)))))))).))))).).)))))))..)).)))).))))))))))))))

Structure

           u   u    ca  ca       u g     C        A            uuuuac  ua   u   cu 
aagucucagag guu gcau  ag  gaagaga c gaaug AGCCAAGG UGACUUGCCGGc      ag  ucu gcu  a
||||||||||| ||| ||||  ||  ||||||| | ||||| |||||||| ||||||||||||      ||  ||| |||   
uuuagagucuc cga ugua  uc  cuucucu g uuuaC UCGGUUCU GUUGAACGGCcg      uc  aga cga  a
           -   c    -a  uc       c a     A        C            -----u  ug   -   cu 

Annotation confidence High

Genome context

MDC044115.7: 12507-12664 [-]

Mature mdm-miR169a-5p

• Accession: MIMAT0025934
• Description: Malus domestica mdm-miR169a-5p mature miRNA
• Sequence: 42 - CAGCCAAGGAUGACUUGCCGG - 62
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR169a-3p

• Accession: MIMAT0056629
• Description: Malus domestica mdm-miR169a-3p mature miRNA
• Sequence: 100 - CGGCAAGUUGCUCUUGGCUAC - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47