Stem-loop mdm-MIR168b

Accession

MI0023037

Description

Malus domestica mdm-MIR168b precursor miRNA

Literature search

5 open access papers mention mdm-MIR168b
(15 sentences)

Sequence

38369 reads, 4637.0 reads per million, 32 experiments

guaggaggcguagggcacgaugauucauuuccuggcggucucuaauUCGCUUGGUGCAGGUCGGGAAccgcuucgycccguuugagccuauaaaccagcuggcucgaggcugcggggcgaaacggrucccgCCUUGCAUCAACUGAAUCGGAgaccgcggugaaggcgguuucauggaucuugcguuccugc
(((((((.(((((((..(.((((..(.((((.(.(((((((((.(((((.((((((((((.(((((.(((.((((.((((((((((((............)))))))....))))).)))).))).))))).)))))))))).))))).))))))))).).))))...)..)))).).))))))))))))))

Structure

       g       ca g    uu --a    c g         a     C          U     A   c    y     ----       uauaa 
guaggag cguaggg  c auga  c   uuuc u gcggucucu auUCG UUGGUGCAGG CGGGA ccg uucg cccgu    uugagcc     a
||||||| |||||||  | ||||  |   |||| | ||||||||| ||||| |||||||||| ||||| ||| |||| |||||    |||||||      
cguccuu gcguucu  g uacu  g   gaag g cgccagAGG UAAGU AACUACGUUC gcccu ggc aagc gggcg    agcucgg     c
       -       -a g    uu gcg    u g         C     C          C     r   a    g     ucgg       ucgac 

Annotation confidence Medium

Genome context

MDC019425.247: 3213-3404 [+]

Mature mdm-miR168b-5p

• Accession: MIMAT0025933
• Description: Malus domestica mdm-miR168b-5p mature miRNA
• Sequence: 47 - UCGCUUGGUGCAGGUCGGGAA - 67
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR168b-3p

• Accession: MIMAT0056628
• Description: Malus domestica mdm-miR168b-3p mature miRNA
• Sequence: 132 - CCUUGCAUCAACUGAAUCGGA - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47