Stem-loop mdm-MIR168a

Accession

MI0023036

Description

Malus domestica mdm-MIR168a precursor miRNA

Literature search

10 open access papers mention mdm-MIR168a
(24 sentences)

Sequence

39507 reads, 4585.0 reads per million, 32 experiments

gcggucucuaauUCGCUUGGUGCAGGUCGGGAAccgcuuugcccuacuuuaccgugucugggccuaugagcuagguggcucgauguguaaucggccacagggcaaaacaggucccgCCUUGCAUCAACUGAAUCGGAgaccgc
(((((((((.(((((.((((((((((.(((((.((..((((((((............((((.........))))(((((.((((.....)))))))))))))))))...))))))).)))))))))).))))).)))))))))

Structure

         a     C          U     A  -gc        acuuuaccgugucugggccuaugagcuag     u    g 
gcggucucu auUCG UUGGUGCAGG CGGGA cc   uuugcccu                             guggc cgau u
||||||||| ||||| |||||||||| ||||| ||   ||||||||                             ||||| |||| g
cgccagAGG UAAGU AACUACGUUC gcccu gg   aaacggga                             caccg gcua u
         C     C          C     -  aca        -----------------------------     -    a 

Annotation confidence Medium

Genome context

MDC036375.12: 8051-8193 [+]

Mature mdm-miR168a-5p

• Accession: MIMAT0025932
• Description: Malus domestica mdm-miR168a-5p mature miRNA
• Sequence: 13 - UCGCUUGGUGCAGGUCGGGAA - 33
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR168a-3p

• Accession: MIMAT0056627
• Description: Malus domestica mdm-miR168a-3p mature miRNA
• Sequence: 117 - CCUUGCAUCAACUGAAUCGGA - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47