Accession
MI0023031
Description
Malus domestica
mdm-MIR167f precursor miRNA
Literature search
11 open access papers mention mdm-MIR167f
(178 sentences)
(178 sentences)
Sequence
143060
reads,
10740.0
reads per million, 32 experiments
ucucugaagccuccaagaugaaagaagaacagaaagaaggagaagaagaaugaccuagcuacuugcuaucuuaucgugcaccuccaauaguUGAAGCUGCCAGCAUGAUCUAagcuuucuuuguacauaggacaggcuaGAUCAUGUGGUCGCUUCACCUGuugaaugaagcacgagaaaacccuagauucacagccaucgaccuccucaagaacccauuaggguuuuuuuuuuuuuuuucggaga
..........((((..((.(((((((((.........(((((..((.(..((...((((.....)))).....((((((.....((((((.((((((.((((.(((((((((.((((((((.......)))).))))))))))))))))).)))))).))))))......))))))................))..).))...))))).((((((((....))))))))))))))))).)))))).
..........((((..((.(((((((((.........(((((..((.(..((...((((.....)))).....((((((.....((((((.((((((.((((.(((((((((.((((((((.......)))).))))))))))))))))).)))))).))))))......))))))................))..).))...))))).((((((((....))))))))))))))))).)))))).
Structure
ucucugaagc aa u ------------acagaaaga -aa a aa accuagcuacuugcuaucuua -accuc u U G a - ug
cucc ga gaaagaaga aggag ga g ug ucgugc caauag UGAAGC GCCA CAUGAUCUA gcuu ucuu u
|||| || ||||||||| ||||| || | || |||||| |||||| |||||| |||| ||||||||| |||| |||| a
gagg cu uuuuuuuuu uccuc cu c ac agcacg guuGUC ACUUCG UGGU GUACUAGau cgga agga c
---------a -- u uuuuugggauuacccaagaac cag a cg -----acuuagaucccaaaag aaguaa C C - - c ua
Annotation confidence
High
Do you think this miRNA is real?
Genome context
MDC006026.285: 8688-8933 [-]
Database links
Mature mdm-miR167f-5p
| Accession | MIMAT0025927 |
| Description | Malus domestica mdm-miR167f-5p mature miRNA |
| Sequence | 92 - UGAAGCUGCCAGCAUGAUCUA - 112 |
| Evidence |
experimental
miRNAseq [1] |
Mature mdm-miR167f-3p
| Accession | MIMAT0056622 |
| Description | Malus domestica mdm-miR167f-3p mature miRNA |
| Sequence | 140 - GAUCAUGUGGUCGCUUCACCUG - 161 |
| Evidence |
experimental
unknown |
References
|
