Stem-loop mdm-MIR167e

Accession

MI0023030

Description

Malus domestica mdm-MIR167e precursor miRNA

Literature search

12 open access papers mention mdm-MIR167e
(184 sentences)

Sequence

123299 reads, 10219.0 reads per million, 30 experiments

ggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuurgcuaaagauauguacaaucacacauauauaugugruuaucaguucuauuaacucuagcuaGGUCAUGCUCUGACAGCCUCACUccuucc
((((..(((((.(((((.((((((((((((((...(.((((((..((......((((........)))).....))..))).))).)...))))))))))))))..).)))).)))))..))))

Structure

    aa     A    - -C              uur c   -   ua  uacaau    cau 
ggaa  agUGA GCUG C  AGCAUGAUCUAgcu   g uaa aga  ug      caca   a
||||  ||||| |||| |  ||||||||||||||   | ||| |||  ||      ||||    
ccuu  UCACU CGAC G  UCGUACUGGaucga   c auu ucu  ac      gugu   u
    cc     C    A UC              ucu a   a   ug  -uauur    aua 

Annotation confidence High

Genome context

MDC016665.144: 18208-18331 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR167e

Mature mdm-miR167e-5p

• Accession: MIMAT0025926
• Description: Malus domestica mdm-miR167e-5p mature miRNA
• Sequence: 9 - UGAAGCUGCCAGCAUGAUCUA - 29
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR167e-3p

• Accession: MIMAT0056621
• Description: Malus domestica mdm-miR167e-3p mature miRNA
• Sequence: 96 - GGUCAUGCUCUGACAGCCUCACU - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47