Stem-loop mdm-MIR167d

Accession

MI0023029

Description

Malus domestica mdm-MIR167d precursor miRNA

Literature search

11 open access papers mention mdm-MIR167d
(180 sentences)

Sequence

146047 reads, 10678.0 reads per million, 31 experiments

ucguggaccaauagcgguUGAAGCUGCCAGCAUGAUCUAaacuucccucuuggucaaggaaagaucAGAUCAUGUGGUAGCUUCACCUGuugauggggaucacga
((((((.(((.((((((.(((((((((((.((((((((...(((.(((........))).)))...))))))))))))))))))).)))))).)))...))))))

Structure

      --a   a      u           G        Aaa   c   cuu 
ucgugg   cca uagcgg UGAAGCUGCCA CAUGAUCU   cuu ccu   g
||||||   ||| |||||| ||||||||||| ||||||||   ||| |||    
agcacu   ggu guuGUC ACUUCGAUGGU GUACUAGA   gaa gga   g
      agg   a      C           -        cua   a   acu 

Annotation confidence High

Genome context

MDC016665.144: 23201-23305 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR167d

Mature mdm-miR167d-5p

• Accession: MIMAT0025925
• Description: Malus domestica mdm-miR167d-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUA - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR167d-3p

• Accession: MIMAT0056620
• Description: Malus domestica mdm-miR167d-3p mature miRNA
• Sequence: 67 - AGAUCAUGUGGUAGCUUCACCUG - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47