Stem-loop mdm-MIR167b

Accession

MI0023027

Description

Malus domestica mdm-MIR167b precursor miRNA

Literature search

11 open access papers mention mdm-MIR167b
(184 sentences)

Sequence

122993 reads, 10077.0 reads per million, 30 experiments

gggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuuggcuaaagauguauauaaucacguauauauguaucaguucuauuaacccuggCUAGGUCAUGCUCUGACAGCuucacuccuuccu
(((((..(((((((((((.((((((((((((((..((.((((.((((((((......)))))))).)..........))).))..))))))))))))))..).))))))))))..)))))

Structure

     aa          - -C              uu  c   ---------- g        aa 
gggaa  agUGAAGCUG C  AGCAUGAUCUAgcu  gg uaa          a auguauau  u
|||||  |||||||||| |  ||||||||||||||  || |||          | ||||||||   
uccuu  ucacuuCGAC G  UCGUACUGGAUCgg  cc auu          u uauauaug  c
     cc          A UC              uc  a   aucuugacua g        ca 

Annotation confidence Low

Genome context

MDC000702.551: 31958-32077 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR167b

Mature mdm-miR167b-5p

• Accession: MIMAT0025923
• Description: Malus domestica mdm-miR167b-5p mature miRNA
• Sequence: 10 - UGAAGCUGCCAGCAUGAUCUA - 30
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR167b-3p

• Accession: MIMAT0056618
• Description: Malus domestica mdm-miR167b-3p mature miRNA
• Sequence: 88 - CUAGGUCAUGCUCUGACAGC - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47