Stem-loop mdm-MIR166h

Accession

MI0023024

Description

Malus domestica mdm-MIR166h precursor miRNA

Literature search

7 open access papers mention mdm-MIR166h
(35 sentences)

Sequence

5811360 reads, 324382.0 reads per million, 32 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGccccuuaacuagaucuaugaucuucaucucaauuggugacaauuuuauccaccaaucuuaaaaaauuayagucccaguugagaaagaucauugauucuacguuuagugacgUCGGACCAGGCUUCAUUCCCCccaa
.((.((((((((..((((((.((((.(.(.((.(((((((((.((((((((..((((((((((.(((((((((...............))))))...))))))))))))))))))))).)).)))).))).)).).).)))).))))))..)))))))).)).

Structure

u  a        UU      C    G c c  u   -    -  u        ca          u   ---      auccac 
 ug ggGGAAUG  GUCUGG UCGA G c cu aac uaga uc augaucuu  ucucaauugg gac   aauuuu      c
 || ||||||||  |||||| |||| | | || ||| |||| || ||||||||  |||||||||| |||   ||||||      a
 ac CCCCUUAC  CGGACC GGCU c g ga uug aucu ag uacuagaa  agaguugacc cug   uuaaaa      a
a  c        UU      A    g a u  u   c    u  u        --          -   aya      aauucu 

Annotation confidence High

Genome context

MDC012450.276: 5153-5315 [+]

Mature mdm-miR166h-5p

• Accession: MIMAT0056615
• Description: Malus domestica mdm-miR166h-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGG - 27
• Evidence: experimental ; unknown

Mature mdm-miR166h-3p

• Accession: MIMAT0025920
• Description: Malus domestica mdm-miR166h-3p mature miRNA
• Sequence: 139 - UCGGACCAGGCUUCAUUCCCC - 159
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47