Stem-loop mdm-MIR166f

Accession

MI0023022

Description

Malus domestica mdm-MIR166f precursor miRNA

Literature search

7 open access papers mention mdm-MIR166f
(35 sentences)

Sequence

5785140 reads, 336051.0 reads per million, 31 experiments

guguugaggGGAAUGCUGUCUGGUUCGAGAccauuccuuugaagcaaagaacaugaacaucgaaugauuUCGGACCAGGCUUCAUUCCCCcuaacac
((((((.((((((((..(((((((((((((.((((((((((...)))))............))))).)))))))))))))..)))))))).))))))

Structure

      a        CU             c     ------------     a 
guguug ggGGAAUG  GUCUGGUUCGAGA cauuc            cuuug  
|||||| ||||||||  ||||||||||||| |||||            ||||| a
cacaau CCCCUUAC  CGGACCAGGCUuu guaag            gaaac  
      c        UU             a     cuacaaguacaa     g 

Annotation confidence High

Genome context

MDC001760.86: 7664-7760 [-]

Mature mdm-miR166f-5p

• Accession: MIMAT0056613
• Description: Malus domestica mdm-miR166f-5p mature miRNA
• Sequence: 10 - GGAAUGCUGUCUGGUUCGAGA - 30
• Evidence: experimental ; unknown

Mature mdm-miR166f-3p

• Accession: MIMAT0025918
• Description: Malus domestica mdm-miR166f-3p mature miRNA
• Sequence: 70 - UCGGACCAGGCUUCAUUCCCC - 90
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47