Stem-loop mdm-MIR166c

Accession

MI0023019

Description

Malus domestica mdm-MIR166c precursor miRNA

Literature search

7 open access papers mention mdm-MIR166c
(35 sentences)

Sequence

11862322 reads, 708137.0 reads per million, 31 experiments

aguuguggGGAAUGUUGUCUGGUUCGAGAUcuuucaauaaaacuugaagaucguuaucaucugaaugaucUCGGACCAGGCUUCAUUCCCCucaacu
(((((.((((((((..(((((((((((((((.((((........(((...)))........)))).)))))))))))))))..)))))))).)))))

Structure

     u        UU               u    auaaaacu   a 
aguug ggGGAAUG  GUCUGGUUCGAGAUc uuca        uga  
||||| ||||||||  ||||||||||||||| ||||        ||| g
ucaac CCCCUUAC  CGGACCAGGCUcuag aagu        gcu  
     u        UU               u    cuacuauu   a 

Annotation confidence High

Genome context

MDC006536.318: 30433-30529 [+]

Mature mdm-miR166c-5p

• Accession: MIMAT0056610
• Description: Malus domestica mdm-miR166c-5p mature miRNA
• Sequence: 9 - GGAAUGUUGUCUGGUUCGAGAU - 30
• Evidence: experimental ; unknown

Mature mdm-miR166c-3p

• Accession: MIMAT0025915
• Description: Malus domestica mdm-miR166c-3p mature miRNA
• Sequence: 71 - UCGGACCAGGCUUCAUUCCCC - 91
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47