Stem-loop mdm-MIR166a

Accession

MI0023017

Description

Malus domestica mdm-MIR166a precursor miRNA

Literature search

9 open access papers mention mdm-MIR166a
(38 sentences)

Sequence

5820235 reads, 324767.0 reads per million, 32 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGacucuuuucauauugaucuauaauccccuagaucaacaaccuucauauauaucuauauguguauguauauguugcguguaucaacugcauacacagagaugaucaggugaauuagugucgUCGGACCAGGCUUCAUUCCCCccaa
.((.((((((((..((((((.((((.(((.((.(((((.((((((((........)))))))).............(((((...((((((((((...((((.......)))))))))))))).))))).....)))))..)).))).)))).))))))..)))))))).)).

Structure

u  a        UU      C    G   u  -u     auugaucuauaauccccuagaucaacaaccuucauaua     aua          uau    cg 
 ug ggGGAAUG  GUCUGG UCGA Gac cu  uucau                                      uaucu   uguguaugua   guug  u
 || ||||||||  |||||| |||| ||| ||  |||||                                      |||||   ||||||||||   ||||  g
 ac CCCCUUAC  CGGACC GGCU cug ga  aagug                                      guaga   acacauacgu   caac  u
a  c        UU      A    g   u  uu     ---------------------------------gacua     --g          ---    ua 

Annotation confidence High

Genome context

MDC011683.626: 7710-7881 [+]

Mature mdm-miR166a-5p

• Accession: MIMAT0056608
• Description: Malus domestica mdm-miR166a-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGG - 27
• Evidence: experimental ; unknown

Mature mdm-miR166a-3p

• Accession: MIMAT0025913
• Description: Malus domestica mdm-miR166a-3p mature miRNA
• Sequence: 148 - UCGGACCAGGCUUCAUUCCCC - 168
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47