Stem-loop mdm-MIR164e

Accession

MI0023015

Description

Malus domestica mdm-MIR164e precursor miRNA

Literature search

8 open access papers mention mdm-MIR164e
(39 sentences)

Sequence

62853 reads, 3404.0 reads per million, 31 experiments

gaUGGAGAAGCAGGGCACGUGCAuuucuaacucauucgcauauacugkgauyuauauacucaauacucuuauuuuucucugagcugcuaaauuauuacaaguuuacagauauauaucucauauccagugaugaguuaguuguuCAUGUGCCCCUCUUCCCCAUC
(((((.((((..(((((((((.((..(((((((((.(((......((.(((.(((((.((((.................))))(((.((((((......)))))))))))))).))).))......))))))))))))..)).)))))))))..)))).)))))

Structure

     A    CA         C  uu         u   auauac  k   y     acucaauacucuuauuuuucucugag   c      au 
gaUGG GAAG  GGGCACGUG Au  cuaacucau cgc      ug gau uauau                          cug uaaauu  u
||||| ||||  ||||||||| ||  ||||||||| |||      || ||| |||||                          ||| ||||||   
CUACC CUUC  CCCGUGUAC ug  gauugagua gug      ac cua auaua                          gac auuuga  a
     C    UC         u  uu         -   accuau  u   u     --------------------------   -      ac 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR164e-5p

• Accession: MIMAT0025911
• Description: Malus domestica mdm-miR164e-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR164e-3p

• Accession: MIMAT0056606
• Description: Malus domestica mdm-miR164e-3p mature miRNA
• Sequence: 144 - CAUGUGCCCCUCUUCCCCAUC - 164
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47