Stem-loop mdm-MIR164d

Accession

MI0023014

Description

Malus domestica mdm-MIR164d precursor miRNA

Literature search

8 open access papers mention mdm-MIR164d
(39 sentences)

Sequence

29259 reads, 1729.0 reads per million, 32 experiments

ugggugaguagcuccuguUGGAGAAGCAGGGCACGUGCAaauucuagcucaagcacuuccucccugggagcuuagcuuaagauuuaacaaagcuuugCACGUGCUCCCCUUCUCCAACacaaguuucucaccuca
.(((((((.((((..(((((((((((..(((((((((((((.(((((((.((((..((((.....))))))))))))..)))...........)))))))))))))..)))))))))))..)))).)))))))..

Structure

-u       u    cc           CA             ----------u   --    c    ac    u 
  gggugag agcu  uguUGGAGAAG  GGGCACGUGCAaa           ucu  agcu aagc  uucc c
  ||||||| ||||  |||||||||||  |||||||||||||           |||  |||| ||||  |||| c
  uccacuc uuga  aCAACCUCUUC  CUCGUGCACguuu           aga  ucga uucg  aggg c
ac       u    ac           CC             cgaaacaauuu   au    -    --    u 

Annotation confidence High

Genome context

MDC010871.402: 12521-12655 [-]

Mature mdm-miR164d-5p

• Accession: MIMAT0025910
• Description: Malus domestica mdm-miR164d-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR164d-3p

• Accession: MIMAT0056605
• Description: Malus domestica mdm-miR164d-3p mature miRNA
• Sequence: 98 - CACGUGCUCCCCUUCUCCAAC - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47