Stem-loop mdm-MIR164c

Accession

MI0023013

Description

Malus domestica mdm-MIR164c precursor miRNA

Literature search

8 open access papers mention mdm-MIR164c
(39 sentences)

Sequence

29291 reads, 1734.0 reads per million, 32 experiments

gggugagacuccuuguUGGAGAAGCAGGGCACGUGCAaaccccauuggcuaugcuucaaaugcgagcgaauaaguuyuuugCACGUGCUCCCCCUCUCCAACacggguuccucaccu
(((((((...((((((((((((.(..(((((((((((((.(..(((.(((.(((.......)))))).)))..)...)))))))))))))..).))))))))).)))...)))))))

Structure

       acu   -         A CA             --c cc   g   a   uu 
gggugag   ccu uguUGGAGA G  GGGCACGUGCAaa   c  auu gcu ugc  c
|||||||   ||| ||||||||| |  |||||||||||||   |  ||| ||| |||  a
uccacuc   ggg aCAACCUCU C  CUCGUGCACguuu   g  uaa cga gcg  a
       cuu   c         C CC             yuu aa   g   -   ua 

Annotation confidence High

Genome context

MDC022516.233: 9079-9195 [+]

Mature mdm-miR164c-5p

• Accession: MIMAT0025909
• Description: Malus domestica mdm-miR164c-5p mature miRNA
• Sequence: 17 - UGGAGAAGCAGGGCACGUGCA - 37
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR164c-3p

• Accession: MIMAT0056604
• Description: Malus domestica mdm-miR164c-3p mature miRNA
• Sequence: 82 - CACGUGCUCCCCCUCUCCAAC - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47