Stem-loop mdm-MIR162b

Accession

MI0023010

Description

Malus domestica mdm-MIR162b precursor miRNA

Literature search

6 open access papers mention mdm-MIR162b
(17 sentences)

Sequence

54775 reads, 3083.0 reads per million, 32 experiments

gcacuGGAGGCAGCGGUUCAUCGAUCUGuuuaugagauuuuguugugaguaaacacaguucaugaaucggUCGAUAAACCUCUGCAUCCAGcgc
((.(((((.((((.((((.(((((((.(((((((((....((((.......))))...))))))))).))))))).)))).)))).))))).))

Structure

  a     G    C    C       U         auuu    gu 
gc cuGGA GCAG GGUU AUCGAUC Guuuaugag    uguu  g
|| ||||| |||| |||| ||||||| |||||||||    ||||  a
cg GACCU CGUC CCAA UAGCUgg uaaguacuu    acaa  g
  c     A    U    A       c         -gac    au 

Annotation confidence High

Genome context

MDC020136.407: 72829-72922 [+]

Mature mdm-miR162b-5p

• Accession: MIMAT0056602
• Description: Malus domestica mdm-miR162b-5p mature miRNA
• Sequence: 6 - GGAGGCAGCGGUUCAUCGAUCUG - 28
• Evidence: experimental ; unknown

Mature mdm-miR162b-3p

• Accession: MIMAT0025906
• Description: Malus domestica mdm-miR162b-3p mature miRNA
• Sequence: 71 - UCGAUAAACCUCUGCAUCCAG - 91
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47