Stem-loop mdm-MIR160d

Accession

MI0023007

Description

Malus domestica mdm-MIR160d precursor miRNA

Literature search

8 open access papers mention mdm-MIR160d
(38 sentences)

Sequence

7233 reads, 505.0 reads per million, 30 experiments

uuaUGCCUGGCUCCCUGUAUGCCAcaagcagaaguucaaucuguuucucgauuggcuauugcgggugGCGUAUGAGGAGUCAAGCAUAg
.(((((.(((((((.((((((((((..((((.(((.(((((........)))))))).))))..)))))))))).))))))).))))).

Structure

u     C       C          aa    a   u     ugu 
 uaUGC UGGCUCC UGUAUGCCAc  gcag agu caauc   u
 ||||| ||||||| ||||||||||  |||| ||| |||||    
 AUACG ACUGAGG GUAUGCGgug  cguu ucg guuag   u
g     A       A          gg    a   -     cuc 

Annotation confidence High

Genome context

MDC021168.418: 2409-2497 [-]

Mature mdm-miR160d-5p

• Accession: MIMAT0025903
• Description: Malus domestica mdm-miR160d-5p mature miRNA
• Sequence: 4 - UGCCUGGCUCCCUGUAUGCCA - 24
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR160d-3p

• Accession: MIMAT0056599
• Description: Malus domestica mdm-miR160d-3p mature miRNA
• Sequence: 68 - GCGUAUGAGGAGUCAAGCAUA - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47