Stem-loop mdm-MIR160c

Accession

MI0023006

Description

Malus domestica mdm-MIR160c precursor miRNA

Literature search

8 open access papers mention mdm-MIR160c
(38 sentences)

Sequence

13118 reads, 741.0 reads per million, 32 experiments

uaugUGCCUGGCUCCCUGUAUGCCAuuugcagagucccaccgaacagcgauggccucuguggaugGCGUAUGAGGAGCCAAGCAUAUA
(((((((.(((((((.((((((((((((((((((..(((.((.....)).))).)))))))))))))))))).))))))).)))))))

Structure

       C       C                  uc   c  a 
uaugUGC UGGCUCC UGUAUGCCAuuugcagag  cca cg a
||||||| ||||||| ||||||||||||||||||  ||| || c
AUAUACG ACCGAGG GUAUGCGguaggugucuc  ggu gc a
       A       A                  -c   a  g 

Annotation confidence High

Genome context

MDC002994.270: 8251-8338 [+]

Mature mdm-miR160c-5p

• Accession: MIMAT0025902
• Description: Malus domestica mdm-miR160c-5p mature miRNA
• Sequence: 5 - UGCCUGGCUCCCUGUAUGCCA - 25
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR160c-3p

• Accession: MIMAT0056598
• Description: Malus domestica mdm-miR160c-3p mature miRNA
• Sequence: 66 - GCGUAUGAGGAGCCAAGCAUAUA - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47