Stem-loop mdm-MIR160a

Accession

MI0023004

Description

Malus domestica mdm-MIR160a precursor miRNA

Literature search

9 open access papers mention mdm-MIR160a
(39 sentences)

Sequence

7095 reads, 496.0 reads per million, 30 experiments

uaUGCCUGGCUCCCUGUAUGCCAcaagcagaaguucaauuucuugauuggcuauugugggugGCGUACAAGGAGCCAAGCAUA
(((((.(((((((.((((((((((..((((.(((.(((((....)))))))).))))..)))))))))).))))))).)))))

Structure

     C       C          aa    a   u     u 
uaUGC UGGCUCC UGUAUGCCAc  gcag agu caauu c
||||| ||||||| ||||||||||  |||| ||| |||||  
AUACG ACCGAGG ACAUGCGgug  uguu ucg guuag u
     A       A          gg    a   -     u 

Annotation confidence High

Genome context

MDC022902.474: 1630-1712 [+]

Mature mdm-miR160a-5p

• Accession: MIMAT0025900
• Description: Malus domestica mdm-miR160a-5p mature miRNA
• Sequence: 3 - UGCCUGGCUCCCUGUAUGCCA - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR160a-3p

• Accession: MIMAT0056596
• Description: Malus domestica mdm-miR160a-3p mature miRNA
• Sequence: 63 - GCGUACAAGGAGCCAAGCAUA - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47