Stem-loop mdm-MIR159b

Accession

MI0023003

Description

Malus domestica mdm-MIR159b precursor miRNA

Literature search

12 open access papers mention mdm-MIR159b
(70 sentences)

Sequence

1266983 reads, 85011.0 reads per million, 32 experiments

ggagcucccuuugauucaaaagcAGGAGGGAGAGAGGGUCUUACACUGcugcugguucauggauaccucuggggugcgcacgguraggaaacugcgcaguuuaaggguuugcaugacccaggagaugugaauuccuucuccucuccuuuCUUGGAUUGAAGGGAGCUCC
(((((((((((((((((((.((.(((((((.(((((((..((.(((..((.((((.(((((.(.((((.((((.((((((.(.........))))))).)))).)))).).))))).)))).))..)))))..)))))))))))))))).)))))))))))))))))))

Structure

                   a  c       A       UC  A   UG  g    u     g u    c    g      c gur 
ggagcucccuuugauucaa ag AGGAGGG GAGAGGG  UU CAC  cu cugg ucaug a accu uggg ugcgca g   a
||||||||||||||||||| || ||||||| |||||||  || |||  || |||| ||||| | |||| |||| |||||| |   g
CCUCGAGGGAAGUUAGGUU uu uccucuc cucuucc  aa gug  ga gacc aguac u uggg auuu acgcgu c   g
                   C  -       -       uu  -   ua  g    c     g u    a    g      - aaa 

Annotation confidence Low

Genome context

MDC007814.270: 550-718 [+]

Mature mdm-miR159b-5p

• Accession: MIMAT0056595
• Description: Malus domestica mdm-miR159b-5p mature miRNA
• Sequence: 24 - AGGAGGGAGAGAGGGUCUUACACUG - 48
• Evidence: experimental ; unknown

Mature mdm-miR159b-3p

• Accession: MIMAT0025899
• Description: Malus domestica mdm-miR159b-3p mature miRNA
• Sequence: 150 - CUUGGAUUGAAGGGAGCUCC - 169
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47